NAME¶
destripe - Destripe volume image data.
SYNOPSIS¶
destripe InputImage OutputImage
DESCRIPTION¶
This program corrects stripe artifacts in acquired image stacks which can result
from between-slice intensity scale differences.
OPTIONS¶
- --help
- Write list of basic command line options to standard
output.
- --help-all
- Write complete list of basic and advanced command line
options to standard output.
- --wiki
- Write list of command line options to standard output in
MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard
output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
and OpenMP).
Slice Orientation¶
- --slice-axis
- Define slice direction axis: this is the through-slice
direction of the acquisition. Supported values:
"guess-from-input", "axial", "sagittal",
"coronal", "slice-x", "slice-y",
"slice-z", where the default is "guess-from-input", or
use one of the following:
- --guess-from-input
- Guess from input image [This is the default]
- --axial, -a
- Sliced axial images
- --sagittal, -s
- Sliced sagittal images
- --coronal, -c
- Sliced coronal images
- --slice-x, -x
- Sliced along x axis
- --slice-y, -y
- Sliced along y axis
- --slice-z, -z
- Sliced along z axis
- --kernel-fwhm <double>
- Gaussian kernel full width at half maximum (FWHM) in units
of slice indexes. [Default: 1]
- --kernel-radius <integer>
- Truncate kernel radius to this many samples. By default,
kernel width is determined to limit approximation error. [Default:
0]
- --write-float
- Write output image in floating point representation. By
default, write using input image pixel data type.
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, and Daniel B. Russakoff
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was
supported by the National Institute of Biomedical Imaging and Bioengineering
under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
