NAME¶
detect_adni_phantom - Detect ADNI phantom landmarks in phantom image
SYNOPSIS¶
detect_adni_phantom InputImage OutputXML
DESCRIPTION¶
This tool detects the locations of all spherical landmarks in a 3D image of the
Magphan EMR051 structural imaging phantom (a.k.a. ADNI Phantom).
OPTIONS¶
- --help
- Write list of basic command line options to standard
output.
- --help-all
- Write complete list of basic and advanced command line
options to standard output.
- --wiki
- Write list of command line options to standard output in
MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard
output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
and OpenMP).
Main Options¶
- --write-labels <image-path>
- Output label image path. This image contains the mask of
detected spheres, each labeled uniquely in their order in CMTK's ADNI
phantom fiducial table. [Default: NONE]
- --write-rigid
<transformation-path>
- Output path for the fitted rigid transformation from
phantom space into RAS image standard space. This transformation defines
where each sphere should be in the image. [Default: NONE]
- --write-affine
<transformation-path>
- Output path for the fitted affine transformation from
phantom space into RAS image standard space. This is the closest
linear-fit transformation, and as such it includes scale and shear
components not present in the fitted rigid transformations. Since these
components are due to scanner miscalibration and distortion, this
transformation DOES NOT specify the correct spehre locations in the image,
but rather, allows for quantification of scale miscalibration.
[Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, and Daniel B. Russakoff
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was
supported by the National Institute of Biomedical Imaging and Bioengineering
under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
