NAME¶
fibxform - Apply coordinate transformations to point coordinates in .fib file.
SYNOPSIS¶
fibxform XformList
DESCRIPTION¶
A file with fiber tracking results from the UNC Fiber Tracking tool is read from
Standard Input and one or more (concatenated) coordinate transformations are
applied to all fiber point coordinates. The result is written to Standard
Output, again in UNC fiber file format.
OPTIONS¶
- --help
- Write list of basic command line options to standard
output.
- --help-all
- Write complete list of basic and advanced command line
options to standard output.
- --wiki
- Write list of command line options to standard output in
MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard
output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
and OpenMP).
Main Options¶
- --inversion-tolerance <double>
- Numerical tolerance of B-spline inversion in mm. Smaller
values will lead to more accurate inversion, but may increase failure
rate. [Default: 0.001]
- --source-image <image-path>
- Set source image of the transformation (i.e., an image
defining the space in which fiber tracking was performed) to correct for
differences in orientation and coordinate space. [Default:
NONE]
- --target-image <image-path>
- Set target image of the transformation (i.e., the image
that the fiber track points are mapped into) to correct for differences in
orientation and coordinate space. [Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, and Daniel B. Russakoff
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was
supported by the National Institute of Biomedical Imaging and Bioengineering
under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
