NAME¶
make_initial_affine - Initialize affine transformation
SYNOPSIS¶
make_initial_affine ReferenceImage FloatingImage OutputXform
DESCRIPTION¶
Compute initial affine transformation by aligning centers of mass or principal
axes
OPTIONS¶
- --help
- Write list of basic command line options to standard
output.
- --help-all
- Write complete list of basic and advanced command line
options to standard output.
- --wiki
- Write list of command line options to standard output in
MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard
output.
- --xml
- Write command line syntax specification in XML markup (for
Slicer integration).
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
and OpenMP).
- --mode
- Mode selection for initialization Supported values:
"direction-vectors", "centers-of-mass",
"principal-axes", "identity", where the default is
"direction-vectors", or use one of the following:
- --direction-vectors
- Alignment based on image direction vectors [This is the
default]
- --centers-of-mass
- Alignment based on centers of mass (translation only)
- --principal-axes
- Alignment based on principal axes
- --identity
- Create only an identity transformation
- --center-xform, -C
- Set transformation center (for rotation, scale) to center
of reference image.
- --native-space
- Write transformation between the native image spaces,
rather than in CMTK standard RAS space. This is the default when running
this tool as a Slicer plugin.
- --db <string>
- Path to image/transformation database that should be
updated with the newly transformation from reference to floating image.
[Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, and Daniel B. Russakoff
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was
supported by the National Institute of Biomedical Imaging and Bioengineering
under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
