NAME¶
sbai - Shape-Based Averaging and interpolation of label images
SYNOPSIS¶
sbai InputImageVector
DESCRIPTION¶
Average segmentations (label fields) using the Euclidean Distance Transform.
This tool performs joint interpolation and averaging by interpolating from the
EDT. This requires that the inputs are transformations from the same fixed to
(not necessarily) different moving images. EDT computation is done in the
space of each moving image. See
http://dx.doi.org/10.1109/TIP.2006.884936 for
details of the underlying algorithm.
OPTIONS¶
- --help
- Write list of basic command line options to standard
output.
- --help-all
- Write complete list of basic and advanced command line
options to standard output.
- --wiki
- Write list of command line options to standard output in
MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard
output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
and OpenMP).
- --num-labels <integer>, -n
<integer>
- Number of labels. It is assumed that only values [0..num]
occur in the images [Default: 0]
- --padding <float>, -p
<float>
- Padding value in input image [Default:
disabled]
- --replace-from <string>
- Replace from pattern
- --replace-to <string>
- Replace to pattern
Output Options¶
- --output <string>, -o
<string>
- File name for output segmentation file. [Default:
sbai.nii ]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, and Daniel B. Russakoff
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was
supported by the National Institute of Biomedical Imaging and Bioengineering
under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
