NAME¶
similarity - Image similarity
SYNOPSIS¶
similarity Image0 Image1
DESCRIPTION¶
Compute similarity measures such as intensity difference or label overlaps
between two images.
OPTIONS¶
- --help
- Write list of basic command line options to standard
output.
- --help-all
- Write complete list of basic and advanced command line
options to standard output.
- --wiki
- Write list of command line options to standard output in
MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard
output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
and OpenMP).
Main Options¶
- --outside-bg
- Assume voxels outside floating image to be background
- --pad0 <double>
- Define padding value for reference image [Default:
disabled]
- --pad1 <double>
- Define padding value for floating image [Default:
disabled]
- --grey, -g
- Image pixels are intensities [This is the
default]
- --labels, -l
- Image pixels are labels
- --mask <string>, -m
<string>
- Mask file for optional region-based analysis [Default:
NONE]
- --force-max <integer>
- Force maximum label value [Default: 0]
- --histogram-text-file <string>
- Output file name for histogram (plain text format).
[Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, and Daniel B. Russakoff
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was
supported by the National Institute of Biomedical Imaging and Bioengineering
under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
