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GODEF(1e) EMBOSS Manual for Debian GODEF(1e)

NAME

godef - Find GO ontology terms by definition

SYNOPSIS

godef -query string [-namespace list] -subclasses boolean -obsolete boolean -godef outobo
godef -help

DESCRIPTION

godef is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Ontology:GO,Data retrieval:Ontology data" command group(s).

OPTIONS

Input section

-query string

Additional section

-namespace list
By default all terms are returned. Searches can be limited to one or a few namespaces. Default value: *

Advanced section

-subclasses boolean
Extend the query matches to include all terms which are specialisations (GO sub-classes) of the matched type. Default value: N
-obsolete boolean
The default behaviour is to not use or return obsolete terms. This option if set will include all terms. Default value: N

Output section

-godef outobo

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

godef is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0