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PALINDROME(1e) EMBOSS Manual for Debian PALINDROME(1e)

NAME

palindrome - Finds inverted repeats in nucleotide sequence(s)

SYNOPSIS

palindrome -sequence seqall -minpallen integer -maxpallen integer -gaplimit integer -nummismatches integer -outfile outfile -overlap boolean
palindrome -help

DESCRIPTION

palindrome is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-minpallen integer
Default value: 10
-maxpallen integer
Default value: 100
-gaplimit integer
Default value: 100
-nummismatches integer

Output section

-outfile outfile
-overlap boolean
Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

palindrome is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0