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PEPNET(1e) EMBOSS Manual for Debian PEPNET(1e)

NAME

pepnet - Draw a helical net for a protein sequence

SYNOPSIS

pepnet -sequence sequence -amphipathic toggle -squares string -diamonds string -octags string -graph graph
pepnet -help

DESCRIPTION

pepnet is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Display,Protein:2D Structure" command group(s).

OPTIONS

Input section

-sequence sequence

Output section

-amphipathic toggle
If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified using the qualifiers '-squares', '-diamonds' and '-octags'.
-squares string
By default the aliphatic residues ILVM are marked with squares. Default value: ILVM
-diamonds string
By default the residues DENQST are marked with diamonds. Default value: DENQST
-octags string
By default the positively charged residues HKR are marked with octagons. Default value: HKR
-graph graph

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

pepnet is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
05/11/2012 EMBOSS 6.4.0