Name¶

SWISS::GeneGroup.pm

Description¶

A SWISS::GeneGroup object contain all synonyms for a given gene name. See SWISS::GNs for a description of the gene name format.

Inherits from¶

SWISS::BaseClass.pm (also implements many methods from SWISS::ListBase.pm)

Attributes¶

"Names"

  Each list element is a SWISS::GN object, describing a primary name
  or synonym. Concatenation of Name and Synonyms lists.
    

"OLN"

  Each list element is a SWISS::GN object, describing an
  OrderedLocusName.
    

"ORFNames"

  Each list element is a SWISS::GN object, describing an ORFName.
    

Methods¶

Standard methods¶

new

fromText

toText

Specific methods¶

Name

Returns the Name (primary name).

Synonyms

Returns the Synonyms.

elements

  Concatenates all elements from Names, OLN and ORFNames in
  a single array.
    

List manipulation methods¶

Since GeneGroup was a previous implementation of SWISS::ListBase, the list manipulation methods below are provided to facilitate compatibility.

size

isEmpty

elements

filter

get (deprecated)

head (deprecated)

tail (deprecated)

item (deprecated)

push (deprecated)

pop (deprecated)

shift (deprecated)

splice (deprecated)

unshift (deprecated)

set (deprecated)

add (deprecated)