NAME¶
pc-compare - Program for scoring alignments according to a reference alignment
with respect to sum-of-pairs and column scores.
SYNOPSIS¶
pc-compare
[ TEST_ALIGNMENT] [REFERENCE_ALIGNMENT]
[BALIBASE_ANNOT_FILE] [ -col] [-core] [-caps]
[-annot FILENAME]
NOTE¶
pc-compare is named
compare in the original sources, but has been remamed
to avoid collision with other program names.
SEE ALSO¶
pc-makegnufile(1),
pc-project(1),from the probcons-extra package,
and
probcons(1) and
probcons-RNA(1) from the probcons package.
REFERENCE¶
Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005.
PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome
Research 15: 330-340.
AUTHORS¶
Chuong Do <chuongdo@cs.stanford.edu>
-
- Wrote probcons in collaboration with Michael Brudno in the
research group of Serafim Batzoglou, Department of Computer Science,
Stanford University.
Charles Plessy <charles-debian-nospam@plessy.org>
-
- Wrote this manpage in DocBook XML for the Debian
distribution.
COPYRIGHT¶
This program and its manpage are in the public domain.
