NAME¶
parrec2nii - convert PARREC image to NIfTI
SYNOPSIS¶
parrec2nii [
OPTIONS]
<PAR files>
DESCRIPTION¶
PAR/REC to NIfTI converter
OPTIONS¶
- --version
- show program's version number and exit
- -h, --help
- show this help message and exit
- -v, --verbose
- Make some noise.
- -o OUTDIR, --output-dir=OUTDIR
- Destination directory for NIfTI files. Default: current
directory.
- -c, --compressed
- Whether to write compressed NIfTI files or not.
- --origin=ORIGIN
- Reference point of the q-form transformation of the NIfTI
image. If 'scanner' the (0,0,0) coordinates will refer to the scanner's
iso center. If 'fov', this coordinate will be the center of the recorded
volume (field of view). Default: 'scanner'.
- --minmax=MINMAX
- Mininum and maximum settings to be stored in the NIfTI
header. If any of them is set to 'parse', the scaled data is scanned for
the actual minimum and maximum. To bypass this potentially slow and memory
intensive step (the data has to be scaled and fully loaded into memory),
fixed values can be provided as spaceseparated pair, e.g. '5.4 120.4'. It
is possible to set a fixed minimum as scan for the actual maximum (and
vice versa). Default: 'parse parse'.
- --store-header
- If set, all information from the PAR header is stored in an
extension of the NIfTI file header. Default: off
- --scaling=SCALING
- Choose data scaling setting. The PAR header defines two
different data scaling settings: 'dv' (values displayed on console) and
'fp' (floating point values). Either one can be chosen, or scaling can be
disabled completely ('off'). Note that neither method will actually scale
the data, but just store the corresponding settings in the NIfTI header.
Default: 'dv'
