NAME¶
br_bioflat.rb — OBDA flat file indexer
SYNOPSIS¶
Search:
br_bioflat.rb [
--search] [
options...]
br_bioflat.rb [
--search] [--location
DIR] [--dbname
DBNAME] [
options...] [
KEYWORDS]
Create index:
br_bioflat.rb [
--create] [
--location DIR]
[--dbname DBNAME] [--format
genbank|embl|fasta ] [options...] [--files
FILES...]
Update index:
br_bioflat.rb [
--update] [
--location DIR]
[--dbname DBNAME] [options...]
[--files FILES...]
Show namespaces:
br_bioflat.rb [
--show-namespaces] [
--location
DIR] [ --dbname DBNAME]
[DIR/DBNAME ]
br_bioflat.rb [
--show-namespaces]
[
--format=CLASS]
br_bioflat.rb [
--show-namespaces] [
--files
file]
DESCRIPTION¶
This manual page documents briefly the
br_bioflat.rb.
br_bioflat.rb is an OBDA flat file indexer.
OPTIONS¶
- --search
- Search a database for keywords.
- --namespace --name
- Only valid with the --search option. Set the search
namespace. You can set this option multiple times to specify more than one
namespace.
- --create
- Create an index.
- --location
- Specify the directory.
- --dbname
- Specify the name of the database.
- --primary --secondary
- Set the primary and secondarynamespace of the index.
Default primary/secondary namespaces depend on the format of the
flatfiles. Only valid with the --create option.
- --add-secondary
- Add secondary namespaces to the default specification. You
can use this option many times. Only valid with the --create option.
- --update
- Update an index
- --sort
- Sort an index. You can set this to a path to an external
sorting program, or BUILTIN to use the builtin sort module. This option is
only valid with --create (or --update) and --type flat options.
- --renew
- Re-read all flatfiles and update whole index. This option
is only valid with the --update option.
- --show-namespaces
- Display the namespaces for an index file.
AUTHOR¶
This manual page was written by David Nusinow dnusinow@debian.org for the
Debian system (but may be used by others). Permission is granted to
copy, distribute and/or modify this document under the terms of the GNU
General Public License, Version 2 any later version published by the Free
Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be
found in /usr/share/common-licenses/GPL.
