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RSEM-GFF3-TO-GTF(1)

User Commands

RSEM-GFF3-TO-GTF(1)

NAME¶

rsem-gff3-to-gtf - Convert GFF3 files to GTF files.

DESCRIPTION¶

usage: rsem-gff3-to-gtf [-h] [--make-genes-as-transcripts]

[--RNA-patterns <patterns>]: [--extract-sequences <output.fa>] input_GFF3_file output_GTF_file

Convert GFF3 files to GTF files.

positional arguments:¶

input_GFF3_file: Input GFF3 file.
output_GTF_file: Output GTF file.

options:¶

-h, --help: show this help message and exit
--make-genes-as-transcripts: GFF3 file does not contain transcripts, make each gene as a transcript. (default: False)
--RNA-patterns <patterns>: Types of RNAs to be extracted, e.g. mRNA,rRNA (default: None)
--extract-sequences <output.fa>: If GFF3 file contains reference sequences, extract them to the specified file (default: None)

September 2022

rsem-gff3-to-gtf 1.3.3+dfsg