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||General Commands Manual
daligner - local alignment discovery between long nucleotide sequencing reads
daligner [options] files...
These tools permit one to find all significant local alignments between reads
encoded in a Dazzler database. The assumption is that the reads are from a
Pacific Biosciences RS II long read sequencer. That is, the reads are long and
noisy, up to 15% on average.
For a complete description of available commands and their options, see