Scroll to navigation
KRAKEN-MPA-REPORT(1) |
User Commands |
KRAKEN-MPA-REPORT(1) |
NAME¶
kraken-mpa-report - assigning taxonomic labels to short DNA sequences
SYNOPSIS¶
kraken-mpa-report [--db KRAKEN_DB_NAME] [options]
<kraken output file(s)>
OPTIONS¶
- --db NAME
- Name of Kraken database (default: none)
- --show-zeros
- Display taxa even if they lack a read in any sample
- --header-line
- Display a header line indicating sample IDs (sample IDs are the
filenames)
- --intermediate-ranks
- Display taxa not at the standard ranks with x__ prefix