Scroll to navigation

mia-3dlandmarks-transform(1) USER COMMANDS mia-3dlandmarks-transform(1)

NAME

mia-3dlandmarks-transform - Transform 3D landmark positions.

SYNOPSIS

mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

mia-3dlandmarks-transform Transform the locations of the landmarks by means of a given 3D transformation. Note, landmark transformations do the inverse of an image transformation (in a manner of speaking), i.e. given a transformation V(x) in an image transformation the pixel intensity at x is set to the original intensity at V(x), while a landmark at x is moved to V(x).

OPTIONS

-i --in-file=(input,required)
input landmark set For supported file types see PLUGINS:3dlandmarklist/io
-o --out-file=(output,required)
output landmark set For supported file types see PLUGINS:3dlandmarklist/io
-t --transformation=(input,required)
transformation file For supported file types see PLUGINS:3dtransform/io

Help & Info

-V --verbose=warning
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit

Processing

--threads=-1
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 3dlandmarklist/io

datapool
Virtual IO to and from the internal data pool
Recognized file extensions: .@
lmx
IO plugin to load and store 3D landmark lists
Recognized file extensions: .lmx

PLUGINS: 3dtransform/io

bbs
Binary (non-portable) serialized IO of 3D transformations
Recognized file extensions: .bbs
datapool
Virtual IO to and from the internal data pool
Recognized file extensions: .@
vista
Vista storage of 3D transformations
Recognized file extensions: .v, .v3dt
xml
XML serialized IO of 3D transformations
Recognized file extensions: .x3dt

EXAMPLE

Transform the landmarks given in input.lmx by applyning the transfromation stored in trans.v and store the result in output.lmx
mia-3dlandmarks-transform -i input.lmx -t trans.v -o output.lmx

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999‐2013 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
17 October 2014 2.0.10