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RAMPLER(1) User Commands RAMPLER(1)

NAME

rampler - module for sampling genomic sequences

DESCRIPTION

usage: rampler [options ...] <mode>

<mode>

subsample <sequences> <reference length> <coverage> [<coverage> ...]

<sequences>

input file in FASTA/FASTQ format (can be compressed with gzip) containing sequences to be subsampled

<reference length>

integer denoting length of the reference genome (or assembly) from which the sequences originate

<coverage>

integer denoting desired coverage of the subsampled sequences

split <sequences> <chunk size>

<sequences>

input file in FASTA/FASTQ format (can be compressed with gzip) containing sequences which will be split into smaller chunks

<chunk size>

integer denoting the desired chunk size in bytes

OPTIONS

-o, --out-directory

default: current directory path in which sampled files will be created

--version

prints the version number

-h, --help

prints the usage

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
June 2018 rampler 1.1.0