NAME¶

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS¶

tree-mean-lengths tree-file < in-file

DESCRIPTION¶

Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:¶

-h, –help

produce help message

–tree arg

tree to re-root

-s arg (=0), –skip arg (=0)

number of tree samples to skip

-u arg, –until arg

Read until this number of trees.

–prune arg

Comma-separated taxa to remove

-x arg (=1), –subsample arg (=1)

factor by which to subsample

–var

report standard deviation of branch lengths instead of mean

–no-node-lengths

ignore branches not in the specified topology

–safe

Don’t die if no trees match the topology

–drop-partial

Remove partial branches

–seed arg

random seed

-V, –verbose

Output more log messages on stderr.

REPORTING BUGS:¶

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS¶

Benjamin Redelings.